PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FEY54
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 501aa    MW: 57106.2 Da    PI: 9.6779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FEY54genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10339385354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h + E++RR+++N ++  Lr+l+P++     +K++ a+++  + eYI++L
  Aradu.FEY54 339 TKHLATEKQRREQLNGKYKILRSLIPSP-----TKMDRASVVGDVNEYIREL 385
                  68999***********************.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR001421.3E-11246275IPR013765DNA recombination and repair protein RecA
PfamPF001541.9E-17260328IPR013765DNA recombination and repair protein RecA
Gene3DG3DSA:3.40.50.3002.0E-4264322IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR001421.3E-11284313IPR013765DNA recombination and repair protein RecA
SuperFamilySSF474599.81E-12334392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.005336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-7339388No hitNo description
PfamPF000104.1E-8339385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-10339387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MLQRLLRRRS APVTAPATIC LAELSSDEIV CSLQRRSPLL QRRFSSGNNL RKRARNFIKL  60
YEICCAFPPT IFSYGDLLHQ RFSSMRSVAQ VFPVASSCIL RLFHLYRASL SIWVFDFLPC  120
QKKLEQLDPA PKSDDRPAKR SRLKSLRDSD SAALEISKEE LDFRNLLEKD LEKFNKFLVE  180
KEEEYIIRLE ELQDRVAKVN VSSEELMKIR KEIGALHVSL VEAVRPYTIL RTSPYCKRIF  240
SRSLLKNDDT NICFRGFWSI LSCVAALVPK GELDGEIGDA HMAMQARLMS QALQKLSHSL  300
SVSQCMLIFI NQQLSQYRTC FGGFRVTTSV GKKREGKGTK HLATEKQRRE QLNGKYKILR  360
SLIPSPTKMD RASVVGDVNE YIRELLKMKA KDDATESCNI KSFSNPDRCI RTSWLQRKLK  420
DSEVDVQIAD DDVTIKLFQR KKVNCLLSVA KFLDELQLEL HHVAGGHIIE GSSVYARAIA  480
NSVIDVMDTQ YAAAVPHTGS Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4twz_A2e-13260329142211Protein RecA
2reb_A2e-13260329142211REC A
1rea_A2e-13260329142211REC A
1n03_G2e-13260329142211RecA protein
1n03_F2e-13260329142211RecA protein
1n03_E2e-13260329142211RecA protein
1n03_D2e-13260329142211RecA protein
1n03_C2e-13260329142211RecA protein
1n03_B2e-13260329142211RecA protein
1n03_A2e-13260329142211RecA protein
2rec_F2e-13260329143212RECA
2rec_E2e-13260329143212RECA
2rec_D2e-13260329143212RECA
2rec_C2e-13260329143212RECA
2rec_B2e-13260329143212RECA
2rec_A2e-13260329143212RECA
4ptl_A2e-13260329143212Protein RecA, 1st part, 2nd part
4psv_A2e-13260329143212Protein RecA, 1st part, 2nd part
4psk_A2e-13260329143212Protein RecA, 1st part, 2nd part
4psa_A2e-13260329143212Protein RecA, 1st part, 2nd part
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5609666e-61JX560966.1 Stylosanthes guianensis SPX domain-containing protein 1 (SPX1) mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.13e-40bHLH family protein